Recombination of chl-fus gene (Plastid Origin) downstream of hop: a locus of chromosomal instability
Identifieur interne : 000012 ( France/Analysis ); précédent : 000011; suivant : 000013Recombination of chl-fus gene (Plastid Origin) downstream of hop: a locus of chromosomal instability
Auteurs : Libia Catalina Salinas Castellanos [Colombie] ; Jacques Chomilier [France] ; Jorge Hernández-Torres [Colombie]Source :
- BMC Genomics [ 1471-2164 ] ; 2015.
Abstract
The co-chaperone Hop [
We reconstructed the evolutionary history of the two convergent plant genes, on the basis of their gene structure, microsynteny and microcolinearity, from 53 plant nuclear genomes. Despite a high degree (72 %) of microcolinearity among vascular plants, our results demonstrate that their adjacency was a product of chromosomal rearrangements. Based on predicted exon − intron structures, we inferred the molecular events giving rise to the current form of genes. Therefore, we propose a simple model of exon/module shuffling by intronic recombinations in which phase-0 introns were essential for domain duplication, and a phase-1 intron for transit peptide recruiting. Finally, we demonstrate a natural susceptibility of the intergenic region to recombine or delete, seriously threatening the integrity of the chl-
Our results are consistent with the interpretation that the chl-
The online version of this article (doi:10.1186/s12864-015-1780-1) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/s12864-015-1780-1
PubMed: 26238241
PubMed Central: 4522979
Affiliations:
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PMC:4522979Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Recombination of chl-<italic>fus</italic> gene (Plastid Origin) downstream of <italic>hop</italic>: a locus of chromosomal instability</title><author><name sortKey="Salinas Castellanos, Libia Catalina" sort="Salinas Castellanos, Libia Catalina" uniqKey="Salinas Castellanos L" first="Libia Catalina" last="Salinas Castellanos">Libia Catalina Salinas Castellanos</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Laboratorio de Biología Molecular, Escuela de Biología, Universidad Industrial de Santander, Apartado Aéreo 678, Bucaramanga, Colombia</nlm:aff><country xml:lang="fr">Colombie</country><wicri:regionArea>Laboratorio de Biología Molecular, Escuela de Biología, Universidad Industrial de Santander, Apartado Aéreo 678, Bucaramanga</wicri:regionArea><wicri:noRegion>Bucaramanga</wicri:noRegion></affiliation></author><author><name sortKey="Chomilier, Jacques" sort="Chomilier, Jacques" uniqKey="Chomilier J" first="Jacques" last="Chomilier">Jacques Chomilier</name><affiliation wicri:level="1"><nlm:aff id="Aff2">IMPMC, UPMC, CNRS UMR 7590, MNHN, IRD, Paris, France and RPBS, Paris, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>IMPMC, UPMC, CNRS UMR 7590, MNHN, IRD, Paris, France and RPBS, Paris</wicri:regionArea><placeName><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Hernandez Torres, Jorge" sort="Hernandez Torres, Jorge" uniqKey="Hernandez Torres J" first="Jorge" last="Hernández-Torres">Jorge Hernández-Torres</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Laboratorio de Biología Molecular, Escuela de Biología, Universidad Industrial de Santander, Apartado Aéreo 678, Bucaramanga, Colombia</nlm:aff><country xml:lang="fr">Colombie</country><wicri:regionArea>Laboratorio de Biología Molecular, Escuela de Biología, Universidad Industrial de Santander, Apartado Aéreo 678, 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level="a" type="main">Recombination of chl-<italic>fus</italic> gene (Plastid Origin) downstream of <italic>hop</italic>: a locus of chromosomal instability</title><author><name sortKey="Salinas Castellanos, Libia Catalina" sort="Salinas Castellanos, Libia Catalina" uniqKey="Salinas Castellanos L" first="Libia Catalina" last="Salinas Castellanos">Libia Catalina Salinas Castellanos</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Laboratorio de Biología Molecular, Escuela de Biología, Universidad Industrial de Santander, Apartado Aéreo 678, Bucaramanga, Colombia</nlm:aff><country xml:lang="fr">Colombie</country><wicri:regionArea>Laboratorio de Biología Molecular, Escuela de Biología, Universidad Industrial de Santander, Apartado Aéreo 678, Bucaramanga</wicri:regionArea><wicri:noRegion>Bucaramanga</wicri:noRegion></affiliation></author><author><name sortKey="Chomilier, Jacques" sort="Chomilier, Jacques" uniqKey="Chomilier J" first="Jacques" last="Chomilier">Jacques Chomilier</name><affiliation wicri:level="1"><nlm:aff id="Aff2">IMPMC, UPMC, CNRS UMR 7590, MNHN, IRD, Paris, France and RPBS, Paris, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>IMPMC, UPMC, CNRS UMR 7590, MNHN, IRD, Paris, France and RPBS, Paris</wicri:regionArea><placeName><settlement type="city">Paris</settlement></placeName></affiliation></author><author><name sortKey="Hernandez Torres, Jorge" sort="Hernandez Torres, Jorge" uniqKey="Hernandez Torres J" first="Jorge" last="Hernández-Torres">Jorge Hernández-Torres</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Laboratorio de Biología Molecular, Escuela de Biología, Universidad Industrial de Santander, Apartado Aéreo 678, Bucaramanga, Colombia</nlm:aff><country xml:lang="fr">Colombie</country><wicri:regionArea>Laboratorio de Biología Molecular, Escuela de Biología, Universidad Industrial de Santander, Apartado Aéreo 678, Bucaramanga</wicri:regionArea><wicri:noRegion>Bucaramanga</wicri:noRegion></affiliation></author></analytic><series><title level="j">BMC Genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>The co-chaperone Hop [<italic><underline>h</underline></italic>eat shock protein (HSP) <italic><underline>o</underline></italic>rganizing <italic><underline>p</underline></italic>rotein] has been shown to act as an adaptor for protein folding and maturation, in concert with Hsp70 and Hsp90. The <italic>hop</italic> gene is of eukaryotic origin. Likewise, the chloroplast elongation factor G (cEF-G) catalyzes the translocation step in chloroplast protein synthesis. The chl-<italic>fus</italic> gene, which encodes the cEF-G protein, is of plastid origin. Both proteins, Hop and cEF-G, derived from domain duplications. It was demonstrated that the nuclear chl-<italic>fus</italic> gene locates in opposite orientation to a <italic>hop</italic> gene in <italic>Glycine max</italic>. We explored 53 available plant genomes from Chlorophyta to higher plants, to determine whether the chl-<italic>fus</italic> gene was transferred directly downstream of the primordial <italic>hop</italic> in the proto-eukaryote host cell. Since both genes came from exon/module duplication events, we wanted to explore the involvement of introns in the early origin and the ensuing evolutionary changes in gene structure.</p></sec><sec><title>Results</title><p>We reconstructed the evolutionary history of the two convergent plant genes, on the basis of their gene structure, microsynteny and microcolinearity, from 53 plant nuclear genomes. Despite a high degree (72 %) of microcolinearity among vascular plants, our results demonstrate that their adjacency was a product of chromosomal rearrangements. Based on predicted exon − intron structures, we inferred the molecular events giving rise to the current form of genes. Therefore, we propose a simple model of exon/module shuffling by intronic recombinations in which phase-0 introns were essential for domain duplication, and a phase-1 intron for transit peptide recruiting. Finally, we demonstrate a natural susceptibility of the intergenic region to recombine or delete, seriously threatening the integrity of the chl-<italic>fus</italic> gene for the future.</p></sec><sec><title>Conclusions</title><p>Our results are consistent with the interpretation that the chl-<italic>fus</italic> gene was transferred from the chloroplast to a chromosome different from that of <italic>hop</italic>, in the primitive photosynthetic eukaryote, and much later before the appearance of angiosperms, it was recombined downstream of <italic>hop</italic>. Exon/module shuffling mediated by symmetric intron phases (i.e., phase-0 introns) was essential for gene evolution. The intergenic region is prone to recombine, risking the integrity of both genes.</p></sec><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1186/s12864-015-1780-1) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Tang, H" uniqKey="Tang H">H Tang</name></author><author><name sortKey="Bowers, Je" uniqKey="Bowers J">JE Bowers</name></author><author><name sortKey="Xiyin, W" uniqKey="Xiyin W">W Xiyin</name></author><author><name sortKey="Ming, R" uniqKey="Ming R">R Ming</name></author><author><name sortKey="Alam, M" uniqKey="Alam M">M Alam</name></author><author><name sortKey="Paterson, Ah" uniqKey="Paterson A">AH Paterson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mccouch, Sr" uniqKey="Mccouch S">SR 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Woodcock</name></author><author><name sortKey="Mornon, Jp" uniqKey="Mornon J">JP Mornon</name></author><author><name sortKey="Henrissat, B" uniqKey="Henrissat B">B Henrissat</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Eudes, R" uniqKey="Eudes R">R Eudes</name></author><author><name sortKey="Le Tuan, K" uniqKey="Le Tuan K">K Le Tuan</name></author><author><name sortKey="Delettre, J" uniqKey="Delettre J">J Delettre</name></author><author><name sortKey="Mornon, Jp" uniqKey="Mornon J">JP Mornon</name></author><author><name sortKey="Callebaut, I" uniqKey="Callebaut I">I Callebaut</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ouyang, S" uniqKey="Ouyang S">S Ouyang</name></author><author><name sortKey="Buell, Cr" uniqKey="Buell C">CR Buell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zuker, M" uniqKey="Zuker M">M Zuker</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Colombie</li><li>France</li></country><settlement><li>Paris</li></settlement></list><tree><country name="Colombie"><noRegion><name sortKey="Salinas Castellanos, Libia Catalina" sort="Salinas Castellanos, Libia Catalina" uniqKey="Salinas Castellanos L" first="Libia Catalina" last="Salinas Castellanos">Libia Catalina Salinas Castellanos</name></noRegion><name sortKey="Hernandez Torres, Jorge" sort="Hernandez Torres, Jorge" uniqKey="Hernandez Torres J" first="Jorge" last="Hernández-Torres">Jorge Hernández-Torres</name></country><country name="France"><noRegion><name sortKey="Chomilier, Jacques" sort="Chomilier, Jacques" uniqKey="Chomilier J" first="Jacques" last="Chomilier">Jacques Chomilier</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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|texte= Recombination of chl-fus gene (Plastid Origin) downstream of hop: a locus of chromosomal instability
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